Variant report

Variant	rs9385444
Chromosome Location	chr6:128259915-128259916
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:128259450..128262289-chr6:128263884..128266852,3	MCF-7	breast:
2	chr6:128183469..128185798-chr6:128259779..128262240,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1000066	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1543373	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs156064	1.00[CHB][hapmap]
rs17055105	0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17055123	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2875995	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4895827	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4897235	0.90[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61234808	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs723651	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72618504	1.00[EUR][1000 genomes]
rs802704	1.00[CHB][hapmap];0.80[JPT][hapmap]
rs802708	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs802713	0.85[ASN][1000 genomes]
rs802716	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs802753	0.85[ASN][1000 genomes]
rs9372879	1.00[EUR][1000 genomes]
rs9375538	0.90[CHB][hapmap];0.91[JPT][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9375539	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9385443	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9388600	0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9388602	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9388607	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9398855	1.00[EUR][1000 genomes]
rs9398858	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9398859	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9402000	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1849854	chr6:128143774-128287313	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv1024516	chr6:128184182-128298278	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:128246000-128260200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:128254200-128271400	Weak transcription	Thymus	Thymus
3	chr6:128254400-128260200	Weak transcription	Brain Cingulate Gyrus	brain
4	chr6:128256200-128260400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
5	chr6:128256200-128261400	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr6:128256400-128261000	Enhancers	Primary T killer memory cells from peripheral blood	blood
7	chr6:128256600-128261200	Enhancers	Primary T helper naive cells from peripheral blood	blood
8	chr6:128256600-128261400	Enhancers	Primary T helper cells PMA-I stimulated	--
9	chr6:128257800-128261000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
10	chr6:128258000-128261000	Enhancers	Primary T helper cells fromperipheralblood	blood
11	chr6:128258000-128261400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
12	chr6:128258000-128261400	Enhancers	Osteobl	bone
13	chr6:128258200-128261200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
14	chr6:128258400-128261400	Enhancers	Muscle Satellite Cultured Cells	--
15	chr6:128258600-128260200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr6:128258600-128260600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr6:128258600-128260600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr6:128258600-128261200	Enhancers	NHDF-Ad	bronchial
19	chr6:128258600-128261400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr6:128259000-128261400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
21	chr6:128259000-128261400	Enhancers	HUVEC	blood vessel
22	chr6:128259200-128260600	Weak transcription	Primary T cells from cord blood	blood
23	chr6:128259200-128261200	Enhancers	Dnd41	blood
24	chr6:128259200-128261400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr6:128259200-128261400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr6:128259200-128261400	Enhancers	HepG2	liver
27	chr6:128259400-128260800	Enhancers	A549	lung
28	chr6:128259400-128261400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr6:128259600-128260200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
30	chr6:128259600-128261000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr6:128259600-128261000	Enhancers	Hela-S3	cervix
32	chr6:128259800-128261000	Enhancers	NH-A	brain

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