Variant report

Variant	rs9402000
Chromosome Location	chr6:128162604-128162605
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1000066	1.00[EUR][1000 genomes]
rs1543373	1.00[EUR][1000 genomes]
rs17055105	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17055123	1.00[EUR][1000 genomes]
rs2875995	1.00[EUR][1000 genomes]
rs4895827	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4897235	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61234808	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs723651	1.00[EUR][1000 genomes]
rs72618504	1.00[EUR][1000 genomes]
rs7756237	0.82[ASN][1000 genomes]
rs9372879	0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[EUR][1000 genomes]
rs9375538	0.87[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9375539	1.00[EUR][1000 genomes]
rs9385443	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9385444	1.00[EUR][1000 genomes]
rs9388600	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9388602	1.00[EUR][1000 genomes]
rs9388607	1.00[EUR][1000 genomes]
rs9398855	0.95[CHB][hapmap];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9398858	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9398859	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830799	chr6:128033100-128194511	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	esv1849854	chr6:128143774-128287313	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv525919	chr6:128162392-128162928	Strong transcription Weak transcription Genic enhancers Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:128134800-128180200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr6:128139600-128178800	Weak transcription	Dnd41	blood
3	chr6:128158400-128166600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr6:128160000-128162800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr6:128160600-128163600	Strong transcription	Thymus	Thymus
6	chr6:128160600-128176400	Strong transcription	Fetal Thymus	thymus
7	chr6:128160800-128163200	Strong transcription	Primary T cells fromperipheralblood	blood
8	chr6:128160800-128163200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr6:128161200-128167000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr6:128161600-128165000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr6:128162000-128163200	Strong transcription	Primary T cells from cord blood	blood
12	chr6:128162200-128163200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr6:128162200-128163600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr6:128162200-128163600	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr6:128162400-128162800	Strong transcription	Primary T helper naive cells from peripheral blood	blood
16	chr6:128162400-128164000	Strong transcription	Primary T helper cells PMA-I stimulated	--
17	chr6:128162400-128164800	Weak transcription	Primary T helper cells fromperipheralblood	blood

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