Variant report

Variant	rs270005
Chromosome Location	chr6:128165074-128165075
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs270026	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs270034	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs270037	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs270041	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs270044	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs270045	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7756237	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9372883	0.88[ASN][1000 genomes]
rs9385442	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830799	chr6:128033100-128194511	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	esv1849854	chr6:128143774-128287313	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:128134800-128180200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr6:128139600-128178800	Weak transcription	Dnd41	blood
3	chr6:128158400-128166600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr6:128160600-128176400	Strong transcription	Fetal Thymus	thymus
5	chr6:128161200-128167000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr6:128162800-128174200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr6:128163200-128167800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr6:128163800-128165200	Strong transcription	Thymus	Thymus
9	chr6:128164000-128165200	Genic enhancers	Primary T helper cells PMA-I stimulated	--
10	chr6:128164000-128167800	Weak transcription	Osteobl	bone
11	chr6:128164800-128165200	Strong transcription	Primary T cells from cord blood	blood
12	chr6:128164800-128165200	Genic enhancers	Primary T helper cells fromperipheralblood	blood
13	chr6:128164800-128166800	Strong transcription	Primary T cells fromperipheralblood	blood
14	chr6:128165000-128165200	Enhancers	Primary T helper naive cells from peripheral blood	blood
15	chr6:128165000-128165200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
16	chr6:128165000-128165600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr6:128165000-128165800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr6:128165000-128166000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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