Variant report

Variant	rs270037
Chromosome Location	chr6:128181472-128181473
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs270005	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs270026	0.96[CEU][hapmap];1.00[CHB][hapmap];0.91[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs270034	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs270041	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs270044	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs270045	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7756237	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9372883	1.00[CHB][hapmap];0.87[JPT][hapmap];0.88[ASN][1000 genomes]
rs9385442	1.00[CHB][hapmap];0.87[JPT][hapmap];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830799	chr6:128033100-128194511	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	esv1849854	chr6:128143774-128287313	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:128176600-128181600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
2	chr6:128176600-128181600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
3	chr6:128176600-128183600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
4	chr6:128177200-128181600	Enhancers	Primary T helper naive cells from peripheral blood	blood
5	chr6:128178800-128190800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr6:128179200-128190400	Weak transcription	Brain Cingulate Gyrus	brain
7	chr6:128180000-128182200	Genic enhancers	Primary T cells from cord blood	blood
8	chr6:128180400-128181600	Strong transcription	Primary T cells fromperipheralblood	blood
9	chr6:128180400-128181800	Strong transcription	Fetal Thymus	thymus
10	chr6:128180400-128184600	Weak transcription	Thymus	Thymus
11	chr6:128180400-128189600	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr6:128180400-128190600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr6:128180600-128184600	Weak transcription	Brain Hippocampus Middle	brain
14	chr6:128180600-128189600	Weak transcription	Brain Substantia Nigra	brain
15	chr6:128180800-128183400	Weak transcription	Primary T helper cells fromperipheralblood	blood
16	chr6:128181000-128181600	Genic enhancers	Primary T helper memory cells from peripheral blood 1	blood
17	chr6:128181200-128181600	Enhancers	Primary T killer memory cells from peripheral blood	blood
18	chr6:128181200-128181800	Genic enhancers	Primary T helper cells PMA-I stimulated	--
19	chr6:128181200-128184200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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