Variant report

Variant	rs270034
Chromosome Location	chr6:128177301-128177302
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:128176522..128177363-chr6:128875427..128876053,2	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs270005	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs270026	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs270037	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs270041	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs270044	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs270045	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7756237	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9372883	0.88[ASN][1000 genomes]
rs9385442	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830799	chr6:128033100-128194511	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	esv1849854	chr6:128143774-128287313	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:128134800-128180200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr6:128139600-128178800	Weak transcription	Dnd41	blood
3	chr6:128176200-128177400	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr6:128176200-128180000	Enhancers	Primary T cells from cord blood	blood
5	chr6:128176200-128181200	Enhancers	Primary T helper cells PMA-I stimulated	--
6	chr6:128176400-128177400	Weak transcription	Fetal Thymus	thymus
7	chr6:128176400-128181200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
8	chr6:128176600-128177800	Enhancers	Brain Inferior Temporal Lobe	brain
9	chr6:128176600-128179400	Enhancers	Brain Substantia Nigra	brain
10	chr6:128176600-128180400	Enhancers	Primary T killer memory cells from peripheral blood	blood
11	chr6:128176600-128180800	Enhancers	Primary T helper cells fromperipheralblood	blood
12	chr6:128176600-128181000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
13	chr6:128176600-128181600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
14	chr6:128176600-128181600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
15	chr6:128176600-128183600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
16	chr6:128176800-128177400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
17	chr6:128177000-128178000	Enhancers	Brain Anterior Caudate	brain
18	chr6:128177000-128179000	Enhancers	Thymus	Thymus
19	chr6:128177000-128179200	Enhancers	Brain Hippocampus Middle	brain
20	chr6:128177200-128178200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr6:128177200-128181600	Enhancers	Primary T helper naive cells from peripheral blood	blood

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