Variant report

Variant	rs269997
Chromosome Location	chr6:128123130-128123131
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10872324	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs10872327	0.93[ASN][1000 genomes]
rs11753398	0.90[ASN][1000 genomes]
rs11753615	0.95[ASN][1000 genomes]
rs11961168	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11967147	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs12191259	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs12194548	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12214409	0.85[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs12660845	0.82[CHB][hapmap]
rs12660847	0.82[CHB][hapmap]
rs12661098	0.82[CHB][hapmap]
rs12661121	0.82[CHB][hapmap]
rs12663768	0.82[CHB][hapmap]
rs12664881	0.82[CHB][hapmap]
rs13219045	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1333767	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17055025	0.82[CHB][hapmap]
rs17055029	0.82[CHB][hapmap]
rs17055044	0.82[CHB][hapmap]
rs17301984	0.82[CHB][hapmap]
rs199148	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs269992	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs269993	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs269998	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs270009	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs270010	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs270012	0.85[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.90[ASN][1000 genomes]
rs34389482	0.98[ASN][1000 genomes]
rs394708	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs607322	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs623345	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs6569516	0.95[ASN][1000 genomes]
rs669722	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs68018843	0.80[ASN][1000 genomes]
rs6902009	0.93[ASN][1000 genomes]
rs6902933	0.82[CHB][hapmap]
rs6934865	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6935078	0.82[CHB][hapmap];0.80[ASN][1000 genomes]
rs6935256	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs6939770	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6940280	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6940681	0.97[ASN][1000 genomes]
rs7744896	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7768836	1.00[CHB][hapmap];0.91[JPT][hapmap];0.97[ASN][1000 genomes]
rs7772357	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs7774647	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap]
rs7776202	0.85[CHB][hapmap]
rs9482835	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9491858	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs9491859	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs9767314	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830799	chr6:128033100-128194511	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:128115600-128139200	Weak transcription	Dnd41	blood
2	chr6:128116600-128129000	Strong transcription	Fetal Thymus	thymus
3	chr6:128117000-128131400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr6:128119200-128124400	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr6:128119200-128134200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr6:128119400-128124000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr6:128119400-128124000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr6:128119400-128125600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr6:128121000-128124800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr6:128121200-128124000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr6:128121400-128125400	Strong transcription	Primary T cells from cord blood	blood
12	chr6:128121400-128128200	Strong transcription	Primary T cells fromperipheralblood	blood
13	chr6:128121600-128124000	Strong transcription	Thymus	Thymus
14	chr6:128122000-128123800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr6:128122600-128123200	Genic enhancers	Primary T helper cells fromperipheralblood	blood
16	chr6:128123000-128125600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood

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