Variant report

Variant	rs6569516
Chromosome Location	chr6:128116114-128116115
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10872324	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10872327	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11753398	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11753615	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11967147	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12191259	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12214409	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1333767	0.92[ASN][1000 genomes]
rs17055029	0.82[ASN][1000 genomes]
rs199148	0.87[ASN][1000 genomes]
rs269992	0.90[ASN][1000 genomes]
rs269993	0.90[ASN][1000 genomes]
rs269997	0.95[ASN][1000 genomes]
rs269998	0.95[ASN][1000 genomes]
rs270009	0.90[ASN][1000 genomes]
rs270010	0.87[ASN][1000 genomes]
rs270012	0.86[ASN][1000 genomes]
rs34389482	0.93[ASN][1000 genomes]
rs394708	0.92[ASN][1000 genomes]
rs607322	0.86[ASN][1000 genomes]
rs669722	0.90[ASN][1000 genomes]
rs68018843	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6902009	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6934865	0.80[ASN][1000 genomes]
rs6935256	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6940681	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7768836	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7772357	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9767314	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830799	chr6:128033100-128194511	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:128107400-128119200	Enhancers	Primary T helper cells PMA-I stimulated	--
2	chr6:128110400-128121000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
3	chr6:128111400-128117200	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr6:128111600-128119400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
5	chr6:128112000-128117800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
6	chr6:128112400-128119400	Enhancers	Primary T helper naive cells from peripheral blood	blood
7	chr6:128112600-128118400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr6:128112800-128119200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
9	chr6:128114000-128116400	Enhancers	Primary T killer memory cells from peripheral blood	blood
10	chr6:128115400-128117000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr6:128115400-128117600	Enhancers	Primary T cells from cord blood	blood
12	chr6:128115600-128139200	Weak transcription	Dnd41	blood
13	chr6:128115800-128116600	Weak transcription	Fetal Thymus	thymus
14	chr6:128115800-128118200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr6:128115800-128118600	Weak transcription	Thymus	Thymus
16	chr6:128116000-128116200	Weak transcription	Primary T cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links