Variant report

Variant	rs669722
Chromosome Location	chr6:128103060-128103061
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10872324	0.97[ASN][1000 genomes]
rs10872327	0.88[ASN][1000 genomes]
rs11753398	0.95[ASN][1000 genomes]
rs11753615	0.90[ASN][1000 genomes]
rs11961168	0.83[ASN][1000 genomes]
rs11967147	0.95[ASN][1000 genomes]
rs12191259	0.90[ASN][1000 genomes]
rs12194548	0.80[ASN][1000 genomes]
rs12214409	0.95[ASN][1000 genomes]
rs12665235	0.80[ASN][1000 genomes]
rs1333767	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs199148	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs269992	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs269993	0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs269997	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs269998	0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs270009	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs270010	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs270012	0.94[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs34389482	0.93[ASN][1000 genomes]
rs394708	0.93[ASN][1000 genomes]
rs607322	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6569516	0.90[ASN][1000 genomes]
rs68018843	0.85[ASN][1000 genomes]
rs6902009	0.97[ASN][1000 genomes]
rs6905527	0.80[ASN][1000 genomes]
rs6934865	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6935256	0.93[ASN][1000 genomes]
rs6939770	0.80[ASN][1000 genomes]
rs6940280	0.80[ASN][1000 genomes]
rs6940681	0.93[ASN][1000 genomes]
rs7744896	0.83[ASN][1000 genomes]
rs7768836	0.93[ASN][1000 genomes]
rs7772357	0.93[ASN][1000 genomes]
rs7774647	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9482835	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs9491858	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9491859	0.81[ASN][1000 genomes]
rs9767314	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886639	chr6:127954614-128109244	Strong transcription Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv886643	chr6:127971136-128109244	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv886644	chr6:127976408-128109244	Weak transcription Genic enhancers Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv886647	chr6:127977160-128109244	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv886648	chr6:127983009-128109244	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv830799	chr6:128033100-128194511	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:128101800-128110000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:128102000-128104000	Genic enhancers	Primary T helper cells PMA-I stimulated	--
3	chr6:128102200-128103200	Genic enhancers	Primary T cells from cord blood	blood
4	chr6:128102400-128104400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
5	chr6:128102400-128106200	Strong transcription	Fetal Thymus	thymus
6	chr6:128102600-128104000	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr6:128102800-128104000	Genic enhancers	Primary T cells fromperipheralblood	blood
8	chr6:128102800-128104000	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
9	chr6:128102800-128104000	Enhancers	Primary T killer memory cells from peripheral blood	blood
10	chr6:128103000-128103400	Enhancers	Gastric	stomach
11	chr6:128103000-128103400	Enhancers	Stomach Mucosa	stomach
12	chr6:128103000-128103400	Enhancers	HepG2	liver
13	chr6:128103000-128103600	Enhancers	Lung	lung
14	chr6:128103000-128103800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
15	chr6:128103000-128103800	Genic enhancers	Thymus	Thymus
16	chr6:128103000-128104000	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
17	chr6:128103000-128104200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
18	chr6:128103000-128104200	Genic enhancers	Primary T helper naive cells from peripheral blood	blood
19	chr6:128103000-128111800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

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