Variant report
| Variant | rs17058476 |
|---|---|
| Chromosome Location | chr4:173358881-173358882 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr4:173358874..173361143-chr4:173366552..173368593,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs13130915 | 1.00[JPT][hapmap] |
| rs1503685 | 1.00[YRI][hapmap] |
| rs17058382 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17058388 | 1.00[YRI][hapmap] |
| rs17058391 | 1.00[YRI][hapmap] |
| rs17058411 | 1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17058593 | 1.00[YRI][hapmap] |
| rs17058602 | 1.00[AMR][1000 genomes] |
| rs170776 | 0.87[LWK][hapmap] |
| rs2101251 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs335980 | 0.81[LWK][hapmap] |
| rs335997 | 0.82[YRI][hapmap] |
| rs6821713 | 1.00[YRI][hapmap] |
| rs6840904 | 1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7677902 | 0.87[LWK][hapmap] |
| rs7680736 | 1.00[YRI][hapmap] |
| rs7688719 | 1.00[TSI][hapmap] |
| rs7689558 | 1.00[AMR][1000 genomes] |
| rs7692303 | 1.00[YRI][hapmap] |
| rs871714 | 1.00[YRI][hapmap] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1031592 | chr4:173112542-173662991 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv537359 | chr4:173112542-173662991 | Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | nsv534293 | chr4:173121379-173606082 | Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 4 | nsv880416 | chr4:173287422-173388217 | Enhancers Weak transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 5 | nsv1031327 | chr4:173306405-173465248 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
