Variant report

Variant	rs17064028
Chromosome Location	chr3:60793400-60793401
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs17064029	1.00[CEU][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap]
rs2166814	0.94[EUR][1000 genomes]
rs2205346	0.81[AMR][1000 genomes]
rs2205349	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs2205350	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs2205351	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs2364295	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2364296	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2594144	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs2594145	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs2594147	0.95[EUR][1000 genomes]
rs2594148	1.00[CEU][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes]
rs2594150	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs2736741	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs2736742	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs2736743	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs2736745	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs41505547	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];1.00[ASN][1000 genomes]
rs55881566	1.00[ASN][1000 genomes]
rs56227671	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56290432	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6777650	1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.90[ASN][1000 genomes]
rs6793486	0.91[EUR][1000 genomes]
rs6797329	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs73836145	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9311780	1.00[ASN][1000 genomes]
rs9311781	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529602	chr3:60088353-60830769	Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv998815	chr3:60495872-60830769	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv534038	chr3:60781917-60993082	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv2757872	chr3:60781943-61019003	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv2759152	chr3:60781943-61220809	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:60790800-60794400	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr3:60790800-60795400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr3:60792400-60793400	Enhancers	Brain Germinal Matrix	brain
4	chr3:60793200-60794000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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