Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs17064028	1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.90[ASN][1000 genomes]
rs2205346	0.84[EUR][1000 genomes]
rs2205349	0.89[CEU][hapmap]
rs2205351	0.80[CEU][hapmap]
rs2364295	0.85[MEX][hapmap]
rs2594148	0.86[MEX][hapmap]
rs2594150	1.00[CEU][hapmap]
rs2736741	0.86[MEX][hapmap]
rs2736742	0.89[CEU][hapmap]
rs2736745	0.88[CEU][hapmap]
rs41505547	0.80[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap];0.90[ASN][1000 genomes]
rs55881566	0.90[ASN][1000 genomes]
rs58033755	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6794439	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6797329	1.00[CEU][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73836145	0.90[ASN][1000 genomes]
rs9311780	0.92[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs9311781	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9820935	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9827254	0.81[YRI][hapmap]
rs9830935	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9866819	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529602	chr3:60088353-60830769	Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv998815	chr3:60495872-60830769	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv999828	chr3:60537384-60785274	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:60767000-60782800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr3:60775200-60776000	Enhancers	Brain Germinal Matrix	brain
3	chr3:60775400-60776200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr3:60775600-60776000	Enhancers	HUES48 Cell Line	embryonic stem cell

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