Variant report

rSNPs within LD-proxies of this variant (count:13)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529602	chr3:60088353-60830769	Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv998815	chr3:60495872-60830769	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv999828	chr3:60537384-60785274	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:60755600-60757800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:60755600-60758800	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr3:60755600-60758800	Enhancers	Placenta	Placenta
4	chr3:60755800-60758800	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr3:60756000-60757000	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr3:60756000-60757200	Enhancers	Fetal Lung	lung
7	chr3:60756000-60757600	Enhancers	Fetal Brain Male	brain
8	chr3:60756000-60758200	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr3:60756000-60758200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr3:60756200-60757000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr3:60756200-60757200	Enhancers	NHEK	skin
12	chr3:60756200-60757400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr3:60756200-60758000	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr3:60756200-60758600	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr3:60756200-60758800	Enhancers	H1 Cell Line	embryonic stem cell
16	chr3:60756200-60759000	Enhancers	H9 Cell Line	embryonic stem cell
17	chr3:60756200-60759400	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr3:60756200-60759600	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr3:60756400-60759400	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr3:60756800-60757600	Enhancers	Fetal Brain Female	brain
21	chr3:60756800-60758800	Enhancers	ES-WA7 Cell Line	embryonic stem cell

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