Variant report

Variant	rs9828177
Chromosome Location	chr3:60757519-60757520
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11914648	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28753768	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7634630	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9820875	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9827254	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9830298	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9837219	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529602	chr3:60088353-60830769	Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv998815	chr3:60495872-60830769	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv999828	chr3:60537384-60785274	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:60755600-60757800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:60755600-60758800	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr3:60755600-60758800	Enhancers	Placenta	Placenta
4	chr3:60755800-60758800	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr3:60756000-60757600	Enhancers	Fetal Brain Male	brain
6	chr3:60756000-60758200	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr3:60756000-60758200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr3:60756200-60758000	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr3:60756200-60758600	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr3:60756200-60758800	Enhancers	H1 Cell Line	embryonic stem cell
11	chr3:60756200-60759000	Enhancers	H9 Cell Line	embryonic stem cell
12	chr3:60756200-60759400	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr3:60756200-60759600	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr3:60756400-60759400	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr3:60756800-60757600	Enhancers	Fetal Brain Female	brain
16	chr3:60756800-60758800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
17	chr3:60757400-60758400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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