Variant report

Variant	rs17064411
Chromosome Location	chr13:75995587-75995588
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:75988028..75990689-chr13:75994977..75997792,3	K562	blood:
2	chr13:75902704..75905125-chr13:75993318..75996004,2	K562	blood:
3	chr13:75995155..75997583-chr13:76008441..76010514,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs17064257	1.00[AMR][1000 genomes]
rs17064319	1.00[AMR][1000 genomes]
rs17064366	1.00[AMR][1000 genomes]
rs17064467	1.00[AMR][1000 genomes]
rs17064473	1.00[AMR][1000 genomes]
rs17071230	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498067	chr13:75178898-76012362	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	esv2761803	chr13:75943309-76161774	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv455987	chr13:75972846-76090084	Enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv562346	chr13:75972846-76090084	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:75988400-75997000	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr13:75988600-75999800	Weak transcription	K562	blood
3	chr13:75990400-75996000	Weak transcription	Colon Smooth Muscle	Colon
4	chr13:75991600-75998200	Weak transcription	Right Ventricle	heart
5	chr13:75991800-75999000	Weak transcription	GM12878-XiMat	blood
6	chr13:75993400-75997800	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr13:75993600-75995800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr13:75993600-75996000	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr13:75993600-76006800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr13:75993600-76006800	Weak transcription	Hela-S3	cervix
11	chr13:75993600-76011200	Weak transcription	Fetal Lung	lung
12	chr13:75994000-75996400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr13:75994000-75996400	Enhancers	Ovary	ovary
14	chr13:75994200-75996000	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr13:75994400-75995600	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr13:75994400-76004600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr13:75994800-76002200	Weak transcription	HepG2	liver
18	chr13:75995000-75995600	Enhancers	Pancreas	Pancrea
19	chr13:75995000-75995800	Enhancers	Left Ventricle	heart
20	chr13:75995000-75995800	Enhancers	Skeletal Muscle Male	skeletal muscle
21	chr13:75995200-75996400	Enhancers	Lung	lung
22	chr13:75995200-75996800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr13:75995200-75997200	Enhancers	Fetal Heart	heart
24	chr13:75995400-75995600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr13:75995400-75995600	Enhancers	Psoas Muscle	Psoas
26	chr13:75995400-75995600	Enhancers	Small Intestine	intestine
27	chr13:75995400-75996200	Enhancers	Right Atrium	heart
28	chr13:75995400-75996400	Enhancers	Adipose Nuclei	Adipose

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