Variant report

Variant	rs17064467
Chromosome Location	chr13:76018724-76018725
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:76016614..76019558-chr13:76031564..76033175,2	MCF-7	breast:
2	chr13:76013400..76015872-chr13:76018076..76020883,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs17064257	1.00[AMR][1000 genomes]
rs17064319	1.00[AMR][1000 genomes]
rs17064366	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17064411	1.00[AMR][1000 genomes]
rs17064473	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17071230	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761803	chr13:75943309-76161774	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv455987	chr13:75972846-76090084	Enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv562346	chr13:75972846-76090084	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:76007400-76032000	Weak transcription	Gastric	stomach
2	chr13:76012000-76019800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr13:76012000-76033000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr13:76012600-76019000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr13:76012800-76036000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr13:76014000-76019400	Weak transcription	NHEK	skin
7	chr13:76014600-76019400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr13:76014600-76020000	Weak transcription	A549	lung
9	chr13:76014800-76021800	Enhancers	HepG2	liver
10	chr13:76016800-76019200	Enhancers	Skeletal Muscle Female	skeletal muscle
11	chr13:76017000-76018800	Enhancers	Fetal Heart	heart
12	chr13:76017200-76019200	Weak transcription	NHLF	lung
13	chr13:76017400-76020000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr13:76017800-76019600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr13:76017800-76020200	Weak transcription	K562	blood
16	chr13:76017800-76033400	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr13:76017800-76039400	Weak transcription	Fetal Stomach	stomach
18	chr13:76018000-76019000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr13:76018000-76019400	Weak transcription	Fetal Lung	lung
20	chr13:76018000-76019600	Weak transcription	Adipose Nuclei	Adipose
21	chr13:76018000-76019800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr13:76018000-76019800	Weak transcription	Rectal Mucosa Donor 29	rectum
23	chr13:76018000-76020000	Weak transcription	Fetal Muscle Leg	muscle
24	chr13:76018000-76020000	Weak transcription	Right Ventricle	heart
25	chr13:76018200-76019400	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr13:76018200-76019400	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr13:76018200-76019600	Weak transcription	Colon Smooth Muscle	Colon
28	chr13:76018200-76020000	Enhancers	Liver	Liver
29	chr13:76018200-76022200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
30	chr13:76018600-76018800	Enhancers	Breast Myoepithelial Primary Cells	Breast
31	chr13:76018600-76019600	Weak transcription	Right Atrium	heart
32	chr13:76018600-76020000	Weak transcription	Left Ventricle	heart
33	chr13:76018600-76020000	Weak transcription	Ovary	ovary
34	chr13:76018600-76020000	Weak transcription	Psoas Muscle	Psoas

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