Variant report

Variant	rs17064473
Chromosome Location	chr13:76020619-76020620
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:76013400..76015872-chr13:76018076..76020883,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs17064257	1.00[AMR][1000 genomes]
rs17064319	1.00[AMR][1000 genomes]
rs17064366	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17064411	1.00[AMR][1000 genomes]
rs17064467	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17071230	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761803	chr13:75943309-76161774	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv455987	chr13:75972846-76090084	Enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv562346	chr13:75972846-76090084	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:76007400-76032000	Weak transcription	Gastric	stomach
2	chr13:76012000-76033000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr13:76012800-76036000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr13:76014800-76021800	Enhancers	HepG2	liver
5	chr13:76017800-76033400	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr13:76017800-76039400	Weak transcription	Fetal Stomach	stomach
7	chr13:76018200-76022200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr13:76018800-76021000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr13:76019400-76020800	Active TSS	Skeletal Muscle Female	skeletal muscle
10	chr13:76019400-76021200	Enhancers	HSMM	muscle
11	chr13:76019600-76020800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr13:76019600-76020800	Active TSS	Right Atrium	heart
13	chr13:76019600-76021000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr13:76019800-76021000	Active TSS	Skeletal Muscle Male	skeletal muscle
15	chr13:76020000-76020800	Active TSS	Right Ventricle	heart
16	chr13:76020000-76021000	Active TSS	Ovary	ovary
17	chr13:76020200-76020800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr13:76020400-76020800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr13:76020400-76020800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr13:76020400-76020800	Enhancers	NHLF	lung
21	chr13:76020400-76020800	Enhancers	Osteobl	bone
22	chr13:76020400-76021000	Weak transcription	Fetal Muscle Leg	muscle
23	chr13:76020400-76021000	Weak transcription	Left Ventricle	heart
24	chr13:76020400-76021200	Enhancers	Fetal Lung	lung
25	chr13:76020400-76021400	Enhancers	Adipose Nuclei	Adipose
26	chr13:76020400-76021400	Enhancers	Liver	Liver
27	chr13:76020400-76021400	Enhancers	Hela-S3	cervix
28	chr13:76020400-76021800	Enhancers	Fetal Heart	heart
29	chr13:76020400-76030200	Weak transcription	Pancreatic Islets	Pancreatic Islet
30	chr13:76020400-76054400	Weak transcription	A549	lung
31	chr13:76020600-76020800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr13:76020600-76020800	Enhancers	Muscle Satellite Cultured Cells	--
33	chr13:76020600-76020800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr13:76020600-76020800	Weak transcription	Psoas Muscle	Psoas
35	chr13:76020600-76020800	Flanking Active TSS	HSMMtube	muscle
36	chr13:76020600-76020800	Flanking Active TSS	NHDF-Ad	bronchial
37	chr13:76020600-76021000	Flanking Active TSS	NHEK	skin

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