Variant report

Variant	rs17068925
Chromosome Location	chr5:167090534-167090535
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr5:167090180-167090586	A549	lung:	n/a	chr5:167090340-167090351
2	CEBPB	chr5:167090152-167090545	Hela-S3	cervix:	n/a	chr5:167090340-167090351
3	CEBPB	chr5:167090159-167090538	IMR90	lung:	n/a	chr5:167090340-167090351
4	FOSL2	chr5:167090068-167090595	A549	lung:	n/a	n/a
5	CEBPB	chr5:167090028-167090639	A549	lung:	n/a	chr5:167090340-167090351
6	RFX5	chr5:167089809-167090539	IMR90	lung:	n/a	n/a

Variant related genes	Relation type
ENSG00000254187	TF binding region

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10516036	0.83[ASW][hapmap];0.94[CEU][hapmap];0.86[CHB][hapmap];0.81[CHD][hapmap];1.00[JPT][hapmap];0.80[LWK][hapmap];0.90[MEX][hapmap];0.87[MKK][hapmap];0.93[TSI][hapmap];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11134467	0.94[CEU][hapmap];0.93[TSI][hapmap];0.94[EUR][1000 genomes]
rs11950863	0.94[CEU][hapmap];0.93[TSI][hapmap];0.93[EUR][1000 genomes]
rs1380166	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1459074	0.94[EUR][1000 genomes]
rs1459076	0.93[EUR][1000 genomes]
rs17068914	0.82[CEU][hapmap];0.80[TSI][hapmap]
rs17068972	0.94[EUR][1000 genomes]
rs17068981	0.90[CHB][hapmap];0.82[ASN][1000 genomes]
rs2125576	0.83[ASW][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.80[LWK][hapmap];0.95[MEX][hapmap];0.83[TSI][hapmap];0.85[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs279386	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs41378648	0.86[CHB][hapmap]
rs4351166	0.93[EUR][1000 genomes]
rs4431367	0.94[CEU][hapmap];0.93[TSI][hapmap];0.94[EUR][1000 genomes]
rs4432913	0.94[CEU][hapmap];0.93[TSI][hapmap];0.93[EUR][1000 genomes]
rs4463193	0.96[EUR][1000 genomes]
rs4463194	0.96[EUR][1000 genomes]
rs4546405	0.91[EUR][1000 genomes]
rs56116300	0.90[EUR][1000 genomes]
rs57372018	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72645750	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7718412	0.97[EUR][1000 genomes]
rs898172	0.90[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932627	chr5:166744408-167290959	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1032559	chr5:167070888-167210684	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv2763892	chr5:167080980-167101161	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1027805	chr5:167082800-167285008	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167085000-167092800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr5:167086800-167091000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr5:167088800-167093000	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr5:167089600-167091000	Enhancers	Muscle Satellite Cultured Cells	--
5	chr5:167089800-167090800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr5:167089800-167090800	Enhancers	A549	lung
7	chr5:167089800-167090800	Enhancers	Osteobl	bone
8	chr5:167090000-167090600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr5:167090400-167090600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr5:167090400-167090600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr5:167090400-167091200	Enhancers	HSMM	muscle

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