Variant report

Variant	rs11134467
Chromosome Location	chr5:167101161-167101162
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10035233	0.86[ASN][1000 genomes]
rs10516036	1.00[CEU][hapmap];0.93[TSI][hapmap];0.92[EUR][1000 genomes]
rs11950863	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.98[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12521170	0.84[ASN][1000 genomes]
rs1380166	0.94[CEU][hapmap];0.95[EUR][1000 genomes]
rs1459074	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1459075	0.91[AMR][1000 genomes]
rs1459076	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17068914	0.82[GIH][hapmap];0.92[MEX][hapmap];0.81[TSI][hapmap];0.84[AMR][1000 genomes]
rs17068925	0.94[CEU][hapmap];0.93[TSI][hapmap];0.94[EUR][1000 genomes]
rs17068972	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2125576	0.82[TSI][hapmap]
rs2243779	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs2546988	0.96[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs279385	1.00[CHB][hapmap];0.81[AMR][1000 genomes]
rs279386	0.94[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs279408	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs279409	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs4351166	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4431367	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4432913	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4463193	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4463194	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4546405	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4993460	0.91[ASN][1000 genomes]
rs4993461	0.82[ASN][1000 genomes]
rs4993462	0.82[ASN][1000 genomes]
rs56116300	0.91[EUR][1000 genomes]
rs57372018	0.93[EUR][1000 genomes]
rs6555764	0.82[ASN][1000 genomes]
rs6555765	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs6860687	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs6863828	0.82[ASN][1000 genomes]
rs6885086	0.84[ASN][1000 genomes]
rs6885448	0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs7704071	0.91[ASN][1000 genomes]
rs7704222	0.91[ASN][1000 genomes]
rs7704469	0.86[JPT][hapmap];0.91[ASN][1000 genomes]
rs7718412	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7723247	0.91[CHD][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs7724248	0.91[ASN][1000 genomes]
rs7725107	0.91[CHD][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932627	chr5:166744408-167290959	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1032559	chr5:167070888-167210684	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv2763892	chr5:167080980-167101161	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1027805	chr5:167082800-167285008	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167090600-167115800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:167096800-167103400	Weak transcription	Fetal Lung	lung
3	chr5:167098000-167105200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr5:167098400-167105400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr5:167098600-167103400	Weak transcription	HSMM	muscle
6	chr5:167100400-167101400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr5:167100400-167101400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr5:167100600-167101200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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