Variant report

Variant	rs1459076
Chromosome Location	chr5:167097977-167097978
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10516036	0.91[EUR][1000 genomes]
rs11134467	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11950863	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1380166	0.94[EUR][1000 genomes]
rs1459074	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1459075	0.91[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs17068914	0.84[AMR][1000 genomes]
rs17068925	0.93[EUR][1000 genomes]
rs17068972	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2243779	0.87[AMR][1000 genomes]
rs279385	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs279386	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4351166	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4431367	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4432913	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4463193	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4463194	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4546405	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs56116300	0.90[EUR][1000 genomes]
rs57372018	0.92[EUR][1000 genomes]
rs7718412	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932627	chr5:166744408-167290959	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1032559	chr5:167070888-167210684	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv2763892	chr5:167080980-167101161	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1027805	chr5:167082800-167285008	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167090600-167115800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:167093200-167100400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr5:167093400-167100400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr5:167096000-167098200	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr5:167096200-167098200	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr5:167096400-167098000	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr5:167096600-167099200	Enhancers	Muscle Satellite Cultured Cells	--
8	chr5:167096800-167103400	Weak transcription	Fetal Lung	lung
9	chr5:167097000-167098400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr5:167097200-167098000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr5:167097200-167098000	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr5:167097200-167098400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr5:167097400-167098000	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr5:167097400-167098200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr5:167097400-167099800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr5:167097600-167098000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr5:167097600-167098000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr5:167097600-167098200	Enhancers	NH-A	brain
19	chr5:167097600-167098400	Enhancers	NHDF-Ad	bronchial
20	chr5:167097600-167098600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr5:167097600-167099000	Enhancers	Osteobl	bone
22	chr5:167097800-167098000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr5:167097800-167098000	Enhancers	iPS-15b Cell Line	embryonic stem cell
24	chr5:167097800-167098200	Enhancers	A549	lung
25	chr5:167097800-167098600	Enhancers	HSMM	muscle

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