Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr5:167088748-167088945	MCF10A-Er-Src	breast:	n/a	chr5:167088850-167088861
2	STAT3	chr5:167088789-167088917	MCF10A-Er-Src	breast:	n/a	chr5:167088850-167088861

Variant related genes	Relation type
ENSG00000254187	TF binding region

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11134467	1.00[CHB][hapmap];0.81[AMR][1000 genomes]
rs11950863	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1459074	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1459075	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1459076	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs17068972	0.81[AMR][1000 genomes]
rs17068981	0.95[CEU][hapmap];0.92[EUR][1000 genomes]
rs2125576	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs2243779	0.81[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2609854	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs279386	0.89[CHB][hapmap];0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs41378648	0.95[CEU][hapmap];0.88[EUR][1000 genomes]
rs4351166	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4431367	1.00[CHB][hapmap];0.81[AMR][1000 genomes]
rs4432913	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4463193	0.81[AMR][1000 genomes]
rs4463194	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs67528580	0.88[EUR][1000 genomes]
rs72645750	0.85[EUR][1000 genomes]
rs7718412	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932627	chr5:166744408-167290959	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1032559	chr5:167070888-167210684	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv2763892	chr5:167080980-167101161	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1027805	chr5:167082800-167285008	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167081400-167090400	Weak transcription	HSMM	muscle
2	chr5:167081600-167089800	Weak transcription	Osteobl	bone
3	chr5:167084600-167089800	Weak transcription	A549	lung
4	chr5:167085000-167092800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr5:167086200-167089600	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr5:167086800-167091000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr5:167087000-167089800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr5:167087000-167090000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr5:167087200-167089800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr5:167088200-167088800	Enhancers	Pancreatic Islets	Pancreatic Islet

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