Variant report

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11134467	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs11950863	1.00[CHB][hapmap];0.87[AMR][1000 genomes]
rs1459074	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs1459075	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1459076	0.87[AMR][1000 genomes]
rs17068972	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs17068981	0.81[CEU][hapmap];0.81[EUR][1000 genomes]
rs2125576	0.85[EUR][1000 genomes]
rs2546988	1.00[JPT][hapmap]
rs2609854	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs279385	0.81[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs279386	0.90[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs279408	1.00[JPT][hapmap]
rs279409	1.00[JPT][hapmap]
rs41378648	0.81[CEU][hapmap]
rs4351166	0.87[AMR][1000 genomes]
rs4431367	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4432913	1.00[CHB][hapmap];0.87[AMR][1000 genomes]
rs4463193	0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4463194	0.84[AMR][1000 genomes]
rs6555765	1.00[JPT][hapmap]
rs6860687	1.00[JPT][hapmap]
rs6885448	0.82[JPT][hapmap]
rs72645750	0.97[EUR][1000 genomes]
rs7704469	0.86[JPT][hapmap]
rs7718412	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7723247	1.00[JPT][hapmap]
rs7725107	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932627	chr5:166744408-167290959	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1032559	chr5:167070888-167210684	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv2763892	chr5:167080980-167101161	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1027805	chr5:167082800-167285008	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167081400-167085000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr5:167081400-167090400	Weak transcription	HSMM	muscle
3	chr5:167081600-167085600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr5:167081600-167086200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr5:167081600-167089800	Weak transcription	Osteobl	bone
6	chr5:167081800-167085800	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr5:167082800-167086800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr5:167083400-167088200	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr5:167084000-167085000	Enhancers	Hela-S3	cervix
10	chr5:167084600-167085000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr5:167084600-167089800	Weak transcription	A549	lung

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