Variant report

Variant	rs17072513
Chromosome Location	chr13:29578552-29578553
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs17072532	0.93[EUR][1000 genomes]
rs3886729	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3895287	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4002260	1.00[AMR][1000 genomes]
rs4417411	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74045516	0.93[EUR][1000 genomes]
rs9314926	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9550430	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533835	chr13:29141132-29962069	Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:29575200-29579200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr13:29576200-29580200	Enhancers	Fetal Heart	heart
3	chr13:29578200-29580200	Weak transcription	Left Ventricle	heart
4	chr13:29578400-29578800	Weak transcription	Aorta	Aorta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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