Variant report

Variant	rs4002260
Chromosome Location	chr13:29567820-29567821
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs17072513	1.00[AMR][1000 genomes]
rs17072532	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28681163	1.00[ASN][1000 genomes]
rs3886729	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3895287	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4417411	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56027878	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs74045516	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9314926	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9550429	1.00[ASN][1000 genomes]
rs9550430	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533835	chr13:29141132-29962069	Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:29566800-29574400	Weak transcription	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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