Variant report

Variant	rs3886729
Chromosome Location	chr13:29579928-29579929
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs17072513	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17072532	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2479764	1.00[JPT][hapmap]
rs28681163	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs3011462	1.00[JPT][hapmap]
rs3895287	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4002260	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4417411	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56027878	1.00[ASN][1000 genomes]
rs74045516	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9314926	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9550429	1.00[ASN][1000 genomes]
rs9550430	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533835	chr13:29141132-29962069	Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:29576200-29580200	Enhancers	Fetal Heart	heart
2	chr13:29578200-29580200	Weak transcription	Left Ventricle	heart
3	chr13:29579000-29580600	Enhancers	Placenta Amnion	Placenta Amnion
4	chr13:29579200-29581000	Enhancers	Fetal Stomach	stomach
5	chr13:29579200-29581200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr13:29579400-29580600	Weak transcription	Aorta	Aorta
7	chr13:29579600-29580000	Flanking Active TSS	Fetal Lung	lung
8	chr13:29579600-29580400	Enhancers	Right Atrium	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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