Variant report

Variant	rs17075782
Chromosome Location	chr13:52122681-52122682
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
MIR4703	TF binding region
ENSG00000236778	Chromatin interaction
ENSG00000102786	Chromatin interaction
ENSG00000266611	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs17075786	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17075789	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6650334	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1797261	chr13:52100949-52139113	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:52114400-52122800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr13:52116800-52123000	Weak transcription	Hela-S3	cervix
3	chr13:52116800-52132000	Weak transcription	Pancreas	Pancrea
4	chr13:52117000-52126200	Weak transcription	Adipose Nuclei	Adipose
5	chr13:52117200-52122800	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr13:52117200-52122800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr13:52117200-52122800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr13:52117600-52122800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr13:52121200-52124200	Enhancers	HepG2	liver
10	chr13:52121800-52124800	Enhancers	Monocytes-CD14+_RO01746	blood
11	chr13:52121800-52125400	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr13:52122000-52123200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr13:52122600-52124400	Enhancers	iPS-15b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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