Variant report

Variant	rs17075786
Chromosome Location	chr13:52122810-52122811
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
MIR4703	TF binding region
ENSG00000266611	Chromatin interaction
ENSG00000102786	Chromatin interaction
ENSG00000236778	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs17075782	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17075789	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6650334	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1797261	chr13:52100949-52139113	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:52116800-52123000	Weak transcription	Hela-S3	cervix
2	chr13:52116800-52132000	Weak transcription	Pancreas	Pancrea
3	chr13:52117000-52126200	Weak transcription	Adipose Nuclei	Adipose
4	chr13:52121200-52124200	Enhancers	HepG2	liver
5	chr13:52121800-52124800	Enhancers	Monocytes-CD14+_RO01746	blood
6	chr13:52121800-52125400	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr13:52122000-52123200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr13:52122600-52124400	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr13:52122800-52123600	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr13:52122800-52123800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr13:52122800-52124000	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr13:52122800-52124000	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr13:52122800-52124000	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr13:52122800-52124000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr13:52122800-52124000	Enhancers	K562	blood
16	chr13:52122800-52124200	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr13:52122800-52126800	Weak transcription	HUES48 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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