Variant report

Variant	rs17075789
Chromosome Location	chr13:52123056-52123057
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:11)
CpG islands
(count:0)
Chromatin interactive
region (count:4)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:11 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr13:52122855-52123639	NB4	blood:	n/a	n/a
2	MAFF	chr13:52122655-52123074	K562	blood:	n/a	n/a
3	BHLHE40	chr13:52122976-52123063	HepG2	liver:	n/a	n/a
4	SPI1	chr13:52123027-52123633	GM12878	blood:	n/a	n/a
5	MYC	chr13:52122977-52123799	K562	blood:	n/a	n/a
6	CUX1	chr13:52122995-52123517	K562	blood:	n/a	chr13:52123202-52123213 chr13:52123207-52123216
7	MYC	chr13:52122951-52123628	NB4	blood:	n/a	n/a
8	JUN	chr13:52122765-52124160	K562	blood:	n/a	n/a
9	MYC	chr13:52123008-52123504	K562	blood:	n/a	n/a
10	KAP1	chr13:52123019-52124081	HEK293	kidney:	n/a	n/a
11	KAP1	chr13:52123000-52123645	U2OS	brain:	n/a	n/a

No data

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr13:52122039..52124895-chr13:52125029..52128951,4	MCF-7	breast:
2	chr13:52122493..52124445-chr13:52397766..52400689,2	K562	blood:
3	chr13:52026677..52028551-chr13:52122962..52125114,3	K562	blood:
4	chr13:52024780..52027941-chr13:52120513..52124566,4	MCF-7	breast:

No data

Variant related genes	Relation type
MIR4703	TF binding region
ENSG00000224892	Chromatin interaction
ENSG00000102786	Chromatin interaction
ENSG00000266611	Chromatin interaction
ENSG00000236778	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs17075782	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17075786	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6650334	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1797261	chr13:52100949-52139113	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:52116800-52132000	Weak transcription	Pancreas	Pancrea
2	chr13:52117000-52126200	Weak transcription	Adipose Nuclei	Adipose
3	chr13:52121200-52124200	Enhancers	HepG2	liver
4	chr13:52121800-52124800	Enhancers	Monocytes-CD14+_RO01746	blood
5	chr13:52121800-52125400	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr13:52122000-52123200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr13:52122600-52124400	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr13:52122800-52123600	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr13:52122800-52123800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr13:52122800-52124000	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr13:52122800-52124000	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr13:52122800-52124000	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr13:52122800-52124000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr13:52122800-52124000	Enhancers	K562	blood
15	chr13:52122800-52124200	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr13:52122800-52126800	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr13:52123000-52123400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr13:52123000-52123400	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr13:52123000-52123600	Enhancers	Stomach Mucosa	stomach
20	chr13:52123000-52123800	Enhancers	GM12878-XiMat	blood
21	chr13:52123000-52123800	Enhancers	HMEC	breast
22	chr13:52123000-52123800	Enhancers	NHEK	skin
23	chr13:52123000-52124000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
24	chr13:52123000-52124000	Enhancers	Primary neutrophils fromperipheralblood	blood
25	chr13:52123000-52124400	Enhancers	Hela-S3	cervix

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