Variant report

Variant	rs17075961
Chromosome Location	chr3:43777345-43777346
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:43763614..43765287-chr3:43776324..43779230,2	K562	blood:
2	chr3:43776786..43779260-chr3:43782048..43784711,3	K562	blood:
3	chr3:43775591..43778541-chr3:43809723..43813323,3	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs2068969	1.00[MEX][hapmap]
rs6797061	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6797141	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6800061	1.00[CEU][hapmap]
rs6800391	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7629524	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7632220	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9681141	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834673	chr3:43622985-43799876	Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv876733	chr3:43768018-43854669	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43755400-43778200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr3:43755600-43778200	Weak transcription	Brain Germinal Matrix	brain
3	chr3:43755600-43778200	Weak transcription	Fetal Stomach	stomach
4	chr3:43755600-43784000	Weak transcription	Ovary	ovary
5	chr3:43756200-43778400	Weak transcription	Fetal Muscle Leg	muscle
6	chr3:43759600-43778400	Weak transcription	Right Ventricle	heart
7	chr3:43759600-43778600	Weak transcription	Gastric	stomach
8	chr3:43760000-43777800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr3:43760200-43778800	Weak transcription	Aorta	Aorta
10	chr3:43761000-43777600	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr3:43761600-43784200	Weak transcription	Brain Hippocampus Middle	brain
12	chr3:43762200-43778600	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr3:43762400-43777400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr3:43767600-43778400	Strong transcription	Primary neutrophils fromperipheralblood	blood
15	chr3:43768800-43778400	Weak transcription	Dnd41	blood
16	chr3:43769800-43777600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr3:43770200-43778200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr3:43770400-43778600	Weak transcription	Psoas Muscle	Psoas
19	chr3:43771000-43778200	Weak transcription	Liver	Liver
20	chr3:43772200-43777800	Weak transcription	Duodenum Mucosa	Duodenum
21	chr3:43772400-43777800	Weak transcription	Stomach Mucosa	stomach
22	chr3:43772400-43778600	Weak transcription	Colonic Mucosa	Colon
23	chr3:43772400-43778600	Weak transcription	Pancreas	Pancrea
24	chr3:43772800-43777800	Weak transcription	Rectal Mucosa Donor 29	rectum
25	chr3:43772800-43778400	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr3:43774000-43777400	Strong transcription	Monocytes-CD14+_RO01746	blood
27	chr3:43774200-43778800	Enhancers	NHLF	lung
28	chr3:43774400-43778000	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr3:43774800-43779000	Weak transcription	Thymus	Thymus
30	chr3:43775200-43777400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr3:43775400-43777800	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr3:43775800-43777600	Weak transcription	Primary monocytes fromperipheralblood	blood
33	chr3:43775800-43778400	Weak transcription	Primary B cells from cord blood	blood
34	chr3:43775800-43778600	Weak transcription	Esophagus	oesophagus
35	chr3:43775800-43778600	Weak transcription	Sigmoid Colon	Sigmoid Colon
36	chr3:43775800-43778600	Weak transcription	Skeletal Muscle Female	skeletal muscle
37	chr3:43775800-43779800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
38	chr3:43775800-43779800	Weak transcription	Brain Substantia Nigra	brain
39	chr3:43775800-43780000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr3:43775800-43781600	Weak transcription	Lung	lung
41	chr3:43775800-43782600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr3:43775800-43783600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
43	chr3:43775800-43783800	Weak transcription	Adipose Nuclei	Adipose
44	chr3:43775800-43784000	Weak transcription	Right Atrium	heart
45	chr3:43776000-43778600	Weak transcription	NHEK	skin
46	chr3:43776000-43784400	Weak transcription	Brain Cingulate Gyrus	brain
47	chr3:43776000-43789200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr3:43776200-43777400	Weak transcription	HSMMtube	muscle
49	chr3:43776200-43777800	Weak transcription	Muscle Satellite Cultured Cells	--
50	chr3:43776200-43778200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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