Variant report

Variant	rs6797141
Chromosome Location	chr3:43736171-43736172
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr3:43730737-43736249	MCF10A-Er-Src	breast:	n/a	n/a
2	STAT3	chr3:43735988-43736198	MCF10A-Er-Src	breast:	n/a	n/a
3	FOS	chr3:43736089-43736232	MCF10A-Er-Src	breast:	n/a	n/a
4	IRF1	chr3:43735920-43736248	K562	blood:	n/a	n/a
5	STAT3	chr3:43736027-43736226	MCF10A-Er-Src	breast:	n/a	chr3:43736205-43736217
6	JUND	chr3:43735951-43736201	HepG2	liver:	n/a	n/a
7	MYC	chr3:43735928-43736297	MCF10A-Er-Src	breast:	n/a	n/a
8	MYC	chr3:43735984-43736569	MCF10A-Er-Src	breast:	n/a	n/a
9	CEBPB	chr3:43736149-43736250	Hela-S3	cervix:	n/a	n/a

Variant related genes	Relation type
ANO10	TF binding region

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs17075961	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4336089	0.89[AFR][1000 genomes]
rs6797061	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6800391	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7629524	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7632220	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7649718	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834673	chr3:43622985-43799876	Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43733200-43747000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:43733200-43749200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr3:43733400-43737400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr3:43733400-43743800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr3:43733400-43743800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr3:43733400-43743800	Weak transcription	Ovary	ovary
7	chr3:43733400-43753200	Weak transcription	Fetal Muscle Trunk	muscle
8	chr3:43733400-43767800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr3:43733600-43736200	Flanking Active TSS	NHEK	skin
10	chr3:43733600-43736600	Enhancers	Placenta	Placenta
11	chr3:43733600-43753600	Weak transcription	Fetal Muscle Leg	muscle
12	chr3:43733600-43767400	Weak transcription	Fetal Brain Male	brain
13	chr3:43733600-43768000	Weak transcription	Fetal Kidney	kidney
14	chr3:43733800-43736800	Enhancers	A549	lung
15	chr3:43733800-43737200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr3:43733800-43741800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr3:43733800-43743800	Weak transcription	Fetal Stomach	stomach
18	chr3:43733800-43749400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr3:43734000-43737400	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr3:43734000-43745800	Weak transcription	Fetal Heart	heart
21	chr3:43734000-43751800	Weak transcription	Primary T cells fromperipheralblood	blood
22	chr3:43734000-43753200	Weak transcription	Primary T helper cells PMA-I stimulated	--
23	chr3:43734200-43737800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr3:43734200-43738600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr3:43734200-43741000	Enhancers	Fetal Intestine Large	intestine
26	chr3:43734200-43741800	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr3:43734200-43743000	Weak transcription	Stomach Smooth Muscle	stomach
28	chr3:43734200-43743400	Weak transcription	Colonic Mucosa	Colon
29	chr3:43734200-43747600	Weak transcription	Spleen	Spleen
30	chr3:43734200-43749600	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr3:43734200-43753600	Weak transcription	Primary T cells from cord blood	blood
32	chr3:43734200-43753600	Weak transcription	Rectal Smooth Muscle	rectum
33	chr3:43734200-43754800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
34	chr3:43734400-43736400	Weak transcription	Esophagus	oesophagus
35	chr3:43734400-43737400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
36	chr3:43734400-43737400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr3:43734400-43738800	Enhancers	HMEC	breast
38	chr3:43734400-43741600	Enhancers	Fetal Intestine Small	intestine
39	chr3:43734400-43742600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr3:43734400-43742800	Weak transcription	NH-A	brain
41	chr3:43734400-43743000	Weak transcription	HUVEC	blood vessel
42	chr3:43734400-43743800	Weak transcription	Left Ventricle	heart
43	chr3:43734400-43743800	Weak transcription	Lung	lung
44	chr3:43734400-43743800	Weak transcription	Thymus	Thymus
45	chr3:43734400-43751800	Weak transcription	Brain Inferior Temporal Lobe	brain
46	chr3:43734400-43753200	Weak transcription	Fetal Thymus	thymus
47	chr3:43734400-43753200	Weak transcription	Skeletal Muscle Male	skeletal muscle
48	chr3:43734400-43753200	Weak transcription	HSMMtube	muscle
49	chr3:43734400-43762200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
50	chr3:43734600-43738200	Enhancers	NHDF-Ad	bronchial

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links