Variant report

Variant	rs6800391
Chromosome Location	chr3:43743207-43743208
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs17075961	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2068969	1.00[MEX][hapmap]
rs6797061	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6797141	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6800061	1.00[CEU][hapmap]
rs7629524	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7632220	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9681141	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834673	chr3:43622985-43799876	Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43733200-43747000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:43733200-43749200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr3:43733400-43743800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr3:43733400-43743800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr3:43733400-43743800	Weak transcription	Ovary	ovary
6	chr3:43733400-43753200	Weak transcription	Fetal Muscle Trunk	muscle
7	chr3:43733400-43767800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr3:43733600-43753600	Weak transcription	Fetal Muscle Leg	muscle
9	chr3:43733600-43767400	Weak transcription	Fetal Brain Male	brain
10	chr3:43733600-43768000	Weak transcription	Fetal Kidney	kidney
11	chr3:43733800-43743800	Weak transcription	Fetal Stomach	stomach
12	chr3:43733800-43749400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr3:43734000-43745800	Weak transcription	Fetal Heart	heart
14	chr3:43734000-43751800	Weak transcription	Primary T cells fromperipheralblood	blood
15	chr3:43734000-43753200	Weak transcription	Primary T helper cells PMA-I stimulated	--
16	chr3:43734200-43743400	Weak transcription	Colonic Mucosa	Colon
17	chr3:43734200-43747600	Weak transcription	Spleen	Spleen
18	chr3:43734200-43749600	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr3:43734200-43753600	Weak transcription	Primary T cells from cord blood	blood
20	chr3:43734200-43753600	Weak transcription	Rectal Smooth Muscle	rectum
21	chr3:43734200-43754800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
22	chr3:43734400-43743800	Weak transcription	Left Ventricle	heart
23	chr3:43734400-43743800	Weak transcription	Lung	lung
24	chr3:43734400-43743800	Weak transcription	Thymus	Thymus
25	chr3:43734400-43751800	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr3:43734400-43753200	Weak transcription	Fetal Thymus	thymus
27	chr3:43734400-43753200	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr3:43734400-43753200	Weak transcription	HSMMtube	muscle
29	chr3:43734400-43762200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
30	chr3:43734600-43743800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr3:43734600-43749400	Weak transcription	Brain Angular Gyrus	brain
32	chr3:43734600-43749400	Weak transcription	Brain Hippocampus Middle	brain
33	chr3:43734600-43751800	Weak transcription	Brain Cingulate Gyrus	brain
34	chr3:43734600-43753200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
35	chr3:43734600-43753200	Weak transcription	Primary T helper cells fromperipheralblood	blood
36	chr3:43734600-43753400	Weak transcription	Fetal Brain Female	brain
37	chr3:43734800-43743800	Weak transcription	Aorta	Aorta
38	chr3:43734800-43749400	Weak transcription	Brain Substantia Nigra	brain
39	chr3:43734800-43753600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
40	chr3:43734800-43774400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
41	chr3:43735000-43753200	Weak transcription	Right Ventricle	heart
42	chr3:43735000-43761200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr3:43735200-43753400	Weak transcription	Brain Anterior Caudate	brain
44	chr3:43736600-43743800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr3:43736600-43749000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr3:43736800-43748000	Weak transcription	Pancreas	Pancrea
47	chr3:43736800-43748800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr3:43736800-43749200	Weak transcription	Esophagus	oesophagus
49	chr3:43737400-43743400	Weak transcription	A549	lung
50	chr3:43738000-43762200	Weak transcription	Primary T killer memory cells from peripheral blood	blood

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