Variant report

Variant	rs17076360
Chromosome Location	chr6:147163240-147163241
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:2)
LncRNA
region (count:5)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:2 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:147157189..147159577-chr6:147162372..147164169,2	K562	blood:
2	chr6:147142210..147143797-chr6:147161172..147163299,2	K562	blood:

(count:5 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SHPRH-2	chr6:147160003-147163945	NONHSAT115432
2	lnc-SHPRH-2	chr6:147162622-147163945	NONHSAT115434
3	lnc-SHPRH-2	chr6:147163037-147163945	NONHSAT115435
4	lnc-SHPRH-2	chr6:147163037-147164112	ENSG00000233452.2
5	lnc-SHPRH-2	chr6:147162525-147163945	NONHSAT115433

No data

No data

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs17076362	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17076363	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17076374	0.86[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs41285875	0.85[AFR][1000 genomes]
rs57792312	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57950562	1.00[AMR][1000 genomes]
rs57957947	0.88[AFR][1000 genomes]
rs58448093	0.90[AFR][1000 genomes]
rs73576272	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73576295	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73576301	1.00[AMR][1000 genomes]
rs73578215	1.00[AMR][1000 genomes]
rs73578247	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73578253	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73578261	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73578263	1.00[AMR][1000 genomes]
rs73578273	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830838	chr6:147090745-147274669	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147161200-147163400	Enhancers	Fetal Brain Male	brain
2	chr6:147162200-147163600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr6:147162200-147171400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr6:147162800-147163400	Enhancers	Pancreatic Islets	Pancreatic Islet
5	chr6:147163200-147178800	Weak transcription	Right Atrium	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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