Variant report
| Variant | rs57792312 |
|---|---|
| Chromosome Location | chr6:147158952-147158953 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000164506 | Chromatin interaction |
| ENSG00000233452 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:17)
| rs_ID | r2[population] |
|---|---|
| rs17076360 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17076362 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17076363 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17076374 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs41285875 | 0.86[AFR][1000 genomes] |
| rs57950562 | 1.00[AMR][1000 genomes] |
| rs57957947 | 0.90[AFR][1000 genomes] |
| rs58448093 | 0.92[AFR][1000 genomes] |
| rs73576272 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73576295 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73576301 | 1.00[AMR][1000 genomes] |
| rs73578215 | 1.00[AMR][1000 genomes] |
| rs73578247 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73578253 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73578261 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73578263 | 1.00[AMR][1000 genomes] |
| rs73578273 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv830838 | chr6:147090745-147274669 | Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 21 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:147150200-147162200 | Weak transcription | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
