Variant report

Variant	rs17076362
Chromosome Location	chr6:147164152-147164153
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs17076360	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17076363	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17076374	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs41285875	0.83[AFR][1000 genomes]
rs57792312	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57950562	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57957947	0.86[AFR][1000 genomes]
rs58448093	0.88[AFR][1000 genomes]
rs73576272	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73576295	1.00[AMR][1000 genomes]
rs73576301	1.00[AMR][1000 genomes]
rs73578215	1.00[AMR][1000 genomes]
rs73578247	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73578253	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73578261	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73578263	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73578273	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830838	chr6:147090745-147274669	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147162200-147171400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr6:147163200-147178800	Weak transcription	Right Atrium	heart
3	chr6:147163400-147178800	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr6:147163600-147168400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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