Variant report

Variant	rs17082844
Chromosome Location	chr5:92353796-92353797
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10463223	0.84[EUR][1000 genomes]
rs12054859	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13181580	0.81[ASN][1000 genomes]
rs17082810	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34159272	0.81[ASN][1000 genomes]
rs3843486	0.81[ASN][1000 genomes]
rs3843487	0.81[ASN][1000 genomes]
rs3843488	0.81[ASN][1000 genomes]
rs4869409	0.81[ASN][1000 genomes]
rs4869410	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015770	chr5:91911877-92498264	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1022712	chr5:92191693-92415111	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1028930	chr5:92194772-92415111	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv830399	chr5:92290915-92462490	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:92345000-92357200	Weak transcription	Fetal Kidney	kidney
2	chr5:92348000-92354800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr5:92348000-92354800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr5:92348200-92354400	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr5:92352600-92354400	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr5:92352800-92358400	Weak transcription	HepG2	liver
7	chr5:92353200-92354200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr5:92353400-92354400	Enhancers	Muscle Satellite Cultured Cells	--
9	chr5:92353400-92354800	Enhancers	NHDF-Ad	bronchial
10	chr5:92353600-92354000	Enhancers	NH-A	brain
11	chr5:92353600-92354200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr5:92353600-92354400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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