Variant report

Variant	rs3843487
Chromosome Location	chr5:92392021-92392022
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10463178	0.81[EUR][1000 genomes]
rs10463225	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10463226	0.81[EUR][1000 genomes]
rs10514372	0.81[EUR][1000 genomes]
rs11135563	0.81[ASN][1000 genomes]
rs12656521	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13161302	0.81[EUR][1000 genomes]
rs13181580	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13185751	0.81[EUR][1000 genomes]
rs1353493	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1496333	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1496334	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1496335	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1566032	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17082844	0.81[ASN][1000 genomes]
rs17082892	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17082905	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34132263	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34159272	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34165396	0.81[EUR][1000 genomes]
rs34262922	0.81[EUR][1000 genomes]
rs3843486	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3843488	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4309956	0.81[EUR][1000 genomes]
rs4502796	0.81[EUR][1000 genomes]
rs4869409	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4869410	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60523492	0.82[AFR][1000 genomes]
rs62366831	0.81[EUR][1000 genomes]
rs73772052	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015770	chr5:91911877-92498264	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1022712	chr5:92191693-92415111	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1028930	chr5:92194772-92415111	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv830399	chr5:92290915-92462490	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:92389800-92393000	Weak transcription	NHDF-Ad	bronchial
2	chr5:92390400-92393200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr5:92390800-92393600	Weak transcription	Osteobl	bone
4	chr5:92390800-92394400	Weak transcription	Fetal Lung	lung
5	chr5:92391000-92393800	Weak transcription	NHLF	lung
6	chr5:92391200-92393600	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr5:92391200-92394200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr5:92391400-92393800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr5:92391800-92392800	Weak transcription	HepG2	liver
10	chr5:92392000-92392200	Weak transcription	H1 Cell Line	embryonic stem cell

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