Variant report

Variant	rs34132263
Chromosome Location	chr5:92412606-92412607
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10463178	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10463225	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10463226	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10514372	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11135563	0.94[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12656521	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13161302	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13163742	0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs13181580	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13185751	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13188341	0.94[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1353492	0.94[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1353493	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1353494	0.94[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1496333	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1496334	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1496335	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1566032	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17082892	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17082905	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1908713	0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs34075229	0.85[ASN][1000 genomes]
rs34159272	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34165396	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34262922	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34416809	0.86[AMR][1000 genomes]
rs35117985	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs35527617	0.91[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs35975963	0.86[AMR][1000 genomes]
rs3843486	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3843487	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3843488	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4305632	0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4309956	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4485910	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4502796	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4869409	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4869410	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62366831	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6875964	0.89[AMR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015770	chr5:91911877-92498264	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1022712	chr5:92191693-92415111	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1028930	chr5:92194772-92415111	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv830399	chr5:92290915-92462490	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:92402000-92414200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:92405000-92413800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr5:92405600-92413400	Weak transcription	Ovary	ovary
4	chr5:92408200-92413000	Weak transcription	GM12878-XiMat	blood
5	chr5:92409000-92413800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr5:92409400-92413200	Weak transcription	NH-A	brain
7	chr5:92409400-92413800	Weak transcription	Fetal Lung	lung
8	chr5:92409600-92413800	Weak transcription	HUVEC	blood vessel
9	chr5:92409600-92414000	Weak transcription	NHEK	skin
10	chr5:92409600-92414200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr5:92409600-92414200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr5:92409600-92414200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr5:92409800-92413200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr5:92410000-92413000	Weak transcription	HMEC	breast
15	chr5:92410400-92413600	Enhancers	Muscle Satellite Cultured Cells	--
16	chr5:92411600-92413800	Enhancers	Osteobl	bone
17	chr5:92412000-92414400	Enhancers	HSMM	muscle
18	chr5:92412200-92413800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr5:92412400-92412800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr5:92412400-92414400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr5:92412600-92413000	Weak transcription	HSMMtube	muscle
22	chr5:92412600-92413000	Weak transcription	NHLF	lung
23	chr5:92412600-92413200	Enhancers	Placenta Amnion	Placenta Amnion
24	chr5:92412600-92413400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr5:92412600-92413800	Enhancers	NHDF-Ad	bronchial

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