Variant report

Variant	rs34416809
Chromosome Location	chr5:92430000-92430001
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10463225	0.86[AMR][1000 genomes]
rs11135563	0.81[AMR][1000 genomes]
rs12656521	0.86[AMR][1000 genomes]
rs13188341	0.81[AMR][1000 genomes]
rs1353492	0.81[AMR][1000 genomes]
rs1353493	0.83[AMR][1000 genomes]
rs1353494	0.81[AMR][1000 genomes]
rs1496333	0.86[AMR][1000 genomes]
rs1496334	0.83[AMR][1000 genomes]
rs1496335	0.86[AMR][1000 genomes]
rs17082892	0.86[AMR][1000 genomes]
rs17082905	0.83[AMR][1000 genomes]
rs34132263	0.86[AMR][1000 genomes]
rs35975963	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4869409	0.81[AMR][1000 genomes]
rs4869410	0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015770	chr5:91911877-92498264	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv830399	chr5:92290915-92462490	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:92429000-92435400	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr5:92429000-92435600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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