Variant report

Variant	rs1566032
Chromosome Location	chr5:92398402-92398403
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10463225	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12656521	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13181580	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1496333	0.80[ASN][1000 genomes]
rs1496334	0.80[ASN][1000 genomes]
rs1496335	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1566031	0.92[AFR][1000 genomes]
rs17082892	1.00[CEU][hapmap];0.85[CHB][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17082905	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34132263	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34159272	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3843486	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3843487	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3843488	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4869409	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4869410	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015770	chr5:91911877-92498264	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1022712	chr5:92191693-92415111	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1028930	chr5:92194772-92415111	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv830399	chr5:92290915-92462490	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:92395000-92399800	Weak transcription	Osteobl	bone
2	chr5:92395200-92408000	Weak transcription	Muscle Satellite Cultured Cells	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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