Variant report

Variant	rs17085398
Chromosome Location	chr5:95336630-95336631
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs17085377	1.00[AMR][1000 genomes]
rs17085383	1.00[AMR][1000 genomes]
rs17085395	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17085401	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56771024	1.00[AMR][1000 genomes]
rs60920126	1.00[AMR][1000 genomes]
rs6887424	1.00[AMR][1000 genomes]
rs73771808	1.00[AMR][1000 genomes]
rs73771810	1.00[AMR][1000 genomes]
rs73771813	1.00[AMR][1000 genomes]
rs73771840	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7710262	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7719338	1.00[AMR][1000 genomes]
rs7721265	1.00[AMR][1000 genomes]
rs7736347	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758003	chr5:95231706-95540433	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
2	esv2759355	chr5:95231706-95540433	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
3	nsv823146	chr5:95300912-95453557	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
4	esv2757121	chr5:95304236-95539536	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
5	esv34203	chr5:95310985-95452324	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:95330400-95338400	Enhancers	HepG2	liver
2	chr5:95331000-95340600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr5:95332200-95336800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr5:95333400-95351600	Weak transcription	Stomach Mucosa	stomach
5	chr5:95333600-95360800	Weak transcription	Pancreas	Pancrea
6	chr5:95336200-95337400	Enhancers	Pancreatic Islets	Pancreatic Islet
7	chr5:95336200-95338400	Enhancers	Fetal Intestine Large	intestine
8	chr5:95336200-95338400	Enhancers	Fetal Intestine Small	intestine
9	chr5:95336400-95337000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr5:95336400-95337400	Enhancers	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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