Variant report

Variant	rs73771840
Chromosome Location	chr5:95348201-95348202
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs17085377	1.00[AMR][1000 genomes]
rs17085383	1.00[AMR][1000 genomes]
rs17085395	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17085398	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17085401	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56771024	1.00[AMR][1000 genomes]
rs60920126	1.00[AMR][1000 genomes]
rs6887424	1.00[AMR][1000 genomes]
rs73771808	1.00[AMR][1000 genomes]
rs73771810	1.00[AMR][1000 genomes]
rs73771813	1.00[AMR][1000 genomes]
rs7710262	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7719338	1.00[AMR][1000 genomes]
rs7721265	1.00[AMR][1000 genomes]
rs7736347	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758003	chr5:95231706-95540433	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
2	esv2759355	chr5:95231706-95540433	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
3	nsv823146	chr5:95300912-95453557	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
4	esv2757121	chr5:95304236-95539536	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
5	esv34203	chr5:95310985-95452324	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
6	nsv522097	chr5:95347786-95425199	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
7	nsv522465	chr5:95347786-95425199	Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:95333400-95351600	Weak transcription	Stomach Mucosa	stomach
2	chr5:95333600-95360800	Weak transcription	Pancreas	Pancrea
3	chr5:95344800-95348400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr5:95347800-95349000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr5:95348000-95348800	Enhancers	NHEK	skin
6	chr5:95348000-95352400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr5:95348200-95348800	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr5:95348200-95348800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr5:95348200-95348800	Enhancers	HMEC	breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links