Variant report

Variant	rs56771024
Chromosome Location	chr5:95319007-95319008
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs17085377	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17085383	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17085395	1.00[AMR][1000 genomes]
rs17085398	1.00[AMR][1000 genomes]
rs17085401	1.00[AMR][1000 genomes]
rs60920126	1.00[AMR][1000 genomes]
rs6887424	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73771808	1.00[AMR][1000 genomes]
rs73771810	1.00[AMR][1000 genomes]
rs73771813	1.00[AMR][1000 genomes]
rs73771831	0.80[AFR][1000 genomes]
rs73771840	1.00[AMR][1000 genomes]
rs7710262	1.00[AMR][1000 genomes]
rs7719338	1.00[AMR][1000 genomes]
rs7721265	1.00[AMR][1000 genomes]
rs7736347	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758003	chr5:95231706-95540433	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
2	esv2759355	chr5:95231706-95540433	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
3	nsv823146	chr5:95300912-95453557	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
4	esv2757121	chr5:95304236-95539536	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
5	esv34203	chr5:95310985-95452324	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:95298800-95322600	Weak transcription	Pancreas	Pancrea
2	chr5:95313000-95319800	Weak transcription	HSMM	muscle
3	chr5:95315000-95319600	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr5:95316800-95324000	Weak transcription	Gastric	stomach
5	chr5:95318000-95320800	Weak transcription	Colon Smooth Muscle	Colon
6	chr5:95318200-95325000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr5:95318200-95327600	Enhancers	Fetal Intestine Small	intestine
8	chr5:95318600-95320000	Weak transcription	Fetal Intestine Large	intestine
9	chr5:95318800-95322600	Enhancers	HepG2	liver
10	chr5:95318800-95323000	Enhancers	Liver	Liver
11	chr5:95319000-95321600	Weak transcription	Fetal Heart	heart
12	chr5:95319000-95322200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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