Variant report

Variant	rs17085986
Chromosome Location	chr9:85656309-85656310
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:85655587..85657956-chr9:85677154..85679732,3	MCF-7	breast:
2	chr9:85653743..85659458-chr9:85673867..85682524,10	MCF-7	breast:
3	chr9:85642474..85644010-chr9:85654073..85656615,2	MCF-7	breast:
4	chr9:85648525..85651989-chr9:85652042..85656919,4	MCF-7	breast:
5	chr9:85655420..85657921-chr9:85674583..85677127,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165105	Chromatin interaction

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10117735	1.00[MEX][hapmap]
rs17085959	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.86[YRI][hapmap];0.98[AFR][1000 genomes]
rs17085961	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.86[YRI][hapmap];0.98[AFR][1000 genomes]
rs17085962	0.88[AFR][1000 genomes]
rs17085963	0.86[YRI][hapmap];0.89[AFR][1000 genomes]
rs17085969	0.86[YRI][hapmap];0.98[AFR][1000 genomes]
rs17085973	0.86[YRI][hapmap];0.98[AFR][1000 genomes]
rs17085982	0.86[YRI][hapmap];0.98[AFR][1000 genomes]
rs17085988	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56751483	0.98[AFR][1000 genomes]
rs58323931	0.98[AFR][1000 genomes]
rs58387961	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59113785	0.98[AFR][1000 genomes]
rs59707822	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60115968	1.00[AMR][1000 genomes]
rs7030604	1.00[MEX][hapmap];0.86[YRI][hapmap]
rs7043044	0.86[YRI][hapmap];0.98[AFR][1000 genomes]
rs7043189	0.86[YRI][hapmap];0.98[AFR][1000 genomes]
rs7043478	0.86[YRI][hapmap];0.98[AFR][1000 genomes]
rs73467586	0.98[AFR][1000 genomes]
rs73467588	0.98[AFR][1000 genomes]
rs73467594	0.98[AFR][1000 genomes]
rs73467600	0.98[AFR][1000 genomes]
rs73469405	0.94[AFR][1000 genomes]
rs73469407	0.94[AFR][1000 genomes]
rs73469408	0.94[AFR][1000 genomes]
rs73469410	0.98[AFR][1000 genomes]
rs73469413	0.98[AFR][1000 genomes]
rs73469415	0.98[AFR][1000 genomes]
rs73469417	0.98[AFR][1000 genomes]
rs73469420	0.98[AFR][1000 genomes]
rs73469421	0.98[AFR][1000 genomes]
rs73469424	0.96[AFR][1000 genomes]
rs73469427	0.96[AFR][1000 genomes]
rs73469429	0.94[AFR][1000 genomes]
rs73469430	0.96[AFR][1000 genomes]
rs73469432	0.96[AFR][1000 genomes]
rs73469434	0.98[AFR][1000 genomes]
rs73469435	0.98[AFR][1000 genomes]
rs73469438	0.98[AFR][1000 genomes]
rs73469447	0.98[AFR][1000 genomes]
rs73469468	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73469475	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73469481	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73469484	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73469487	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73469492	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73469496	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73469497	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73469499	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471405	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471407	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471410	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7470762	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893511	chr9:85495968-85833127	Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85640400-85656400	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr9:85644800-85670600	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr9:85645600-85662800	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr9:85647400-85656400	Weak transcription	Stomach Mucosa	stomach
5	chr9:85650200-85656600	Weak transcription	HMEC	breast
6	chr9:85654600-85656400	Weak transcription	NH-A	brain
7	chr9:85654800-85656400	Weak transcription	Osteobl	bone
8	chr9:85655000-85656400	Weak transcription	Pancreas	Pancrea
9	chr9:85655200-85671400	Weak transcription	Fetal Intestine Small	intestine
10	chr9:85656000-85656400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr9:85656200-85656400	Enhancers	A549	lung

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