Variant report

Variant	rs7043044
Chromosome Location	chr9:85646168-85646169
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:85618969..85620782-chr9:85645693..85647630,2	MCF-7	breast:
2	chr9:85646151..85647909-chr9:85674836..85678047,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165105	Chromatin interaction

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs17085959	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17085961	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17085962	0.93[YRI][hapmap];0.89[AFR][1000 genomes]
rs17085963	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17085969	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17085973	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17085980	0.92[YRI][hapmap]
rs17085982	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17085986	0.86[YRI][hapmap];0.98[AFR][1000 genomes]
rs17085988	0.87[YRI][hapmap];0.98[AFR][1000 genomes]
rs56751483	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58019119	1.00[AMR][1000 genomes]
rs58323931	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58387961	0.98[AFR][1000 genomes]
rs59113785	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59707822	0.98[AFR][1000 genomes]
rs7030604	0.85[YRI][hapmap]
rs7043189	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7043478	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73467584	1.00[AMR][1000 genomes]
rs73467586	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73467588	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73467594	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73467600	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73469405	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73469407	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73469408	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73469410	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73469413	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73469415	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73469417	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73469420	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73469421	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73469424	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73469427	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73469429	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73469430	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73469432	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73469434	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73469435	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73469438	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73469447	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73469468	0.98[AFR][1000 genomes]
rs73469475	0.98[AFR][1000 genomes]
rs73469481	0.98[AFR][1000 genomes]
rs73469484	0.98[AFR][1000 genomes]
rs73469487	0.98[AFR][1000 genomes]
rs73469492	0.94[AFR][1000 genomes]
rs73469496	0.98[AFR][1000 genomes]
rs73469497	0.98[AFR][1000 genomes]
rs73469499	0.98[AFR][1000 genomes]
rs73471405	0.98[AFR][1000 genomes]
rs73471407	0.98[AFR][1000 genomes]
rs73471410	0.98[AFR][1000 genomes]
rs7470762	0.98[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893511	chr9:85495968-85833127	Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85640400-85656400	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr9:85644200-85649600	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr9:85644200-85654800	Weak transcription	Fetal Intestine Small	intestine
4	chr9:85644800-85646200	Enhancers	NHDF-Ad	bronchial
5	chr9:85644800-85648400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr9:85644800-85670600	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr9:85645000-85647000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr9:85645000-85647000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr9:85645000-85647000	Weak transcription	NHEK	skin
10	chr9:85645000-85648400	Weak transcription	HMEC	breast
11	chr9:85645000-85649000	Weak transcription	A549	lung
12	chr9:85645200-85649000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr9:85645400-85647400	Enhancers	Gastric	stomach
14	chr9:85645600-85646200	Enhancers	Pancreas	Pancrea
15	chr9:85645600-85662800	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr9:85645800-85647400	Enhancers	Stomach Mucosa	stomach

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