Variant report

Variant	rs58019119
Chromosome Location	chr9:85643598-85643599
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:85642474..85644010-chr9:85654073..85656615,2	MCF-7	breast:
2	chr9:85642708..85644228-chr9:85676845..85678578,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165105	Chromatin interaction

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10429640	1.00[EUR][1000 genomes]
rs17085959	1.00[AMR][1000 genomes]
rs17085961	1.00[AMR][1000 genomes]
rs17085963	1.00[AMR][1000 genomes]
rs17085969	1.00[AMR][1000 genomes]
rs17085973	1.00[AMR][1000 genomes]
rs17085982	1.00[AMR][1000 genomes]
rs17085992	1.00[EUR][1000 genomes]
rs55999203	1.00[EUR][1000 genomes]
rs56751483	1.00[AMR][1000 genomes]
rs57254984	1.00[EUR][1000 genomes]
rs57845461	1.00[EUR][1000 genomes]
rs58084620	1.00[EUR][1000 genomes]
rs58273828	1.00[EUR][1000 genomes]
rs58323931	1.00[AMR][1000 genomes]
rs59113785	1.00[AMR][1000 genomes]
rs7043044	1.00[AMR][1000 genomes]
rs7043189	1.00[AMR][1000 genomes]
rs7043478	1.00[AMR][1000 genomes]
rs73467584	1.00[AMR][1000 genomes]
rs73467586	1.00[AMR][1000 genomes]
rs73467588	1.00[AMR][1000 genomes]
rs73467594	1.00[AMR][1000 genomes]
rs73467600	1.00[AMR][1000 genomes]
rs73469405	1.00[AMR][1000 genomes]
rs73469407	1.00[AMR][1000 genomes]
rs73469408	1.00[AMR][1000 genomes]
rs73469410	1.00[AMR][1000 genomes]
rs73469413	1.00[AMR][1000 genomes]
rs73469415	1.00[AMR][1000 genomes]
rs73469417	1.00[AMR][1000 genomes]
rs73469420	1.00[AMR][1000 genomes]
rs73469421	1.00[AMR][1000 genomes]
rs73469424	1.00[AMR][1000 genomes]
rs73469427	1.00[AMR][1000 genomes]
rs73469429	1.00[AMR][1000 genomes]
rs73469430	1.00[AMR][1000 genomes]
rs73469432	1.00[AMR][1000 genomes]
rs73469434	1.00[AMR][1000 genomes]
rs73469435	1.00[AMR][1000 genomes]
rs73469438	1.00[AMR][1000 genomes]
rs73469447	1.00[AMR][1000 genomes]
rs73651022	1.00[EUR][1000 genomes]
rs73651023	1.00[EUR][1000 genomes]
rs73651024	1.00[EUR][1000 genomes]
rs73651025	1.00[EUR][1000 genomes]
rs73651026	1.00[EUR][1000 genomes]
rs73651028	1.00[EUR][1000 genomes]
rs73651029	1.00[EUR][1000 genomes]
rs73651030	1.00[EUR][1000 genomes]
rs73651031	1.00[EUR][1000 genomes]
rs73651032	1.00[EUR][1000 genomes]
rs73651038	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893511	chr9:85495968-85833127	Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85603200-85643800	Weak transcription	Duodenum Mucosa	Duodenum
2	chr9:85617200-85645800	Weak transcription	Stomach Mucosa	stomach
3	chr9:85621000-85645400	Weak transcription	Gastric	stomach
4	chr9:85636400-85643600	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr9:85639800-85645000	Enhancers	HMEC	breast
6	chr9:85640400-85644400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr9:85640400-85656400	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr9:85641400-85644800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr9:85641400-85645000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr9:85641400-85645000	Enhancers	NHEK	skin
11	chr9:85641600-85644400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr9:85642000-85643800	Weak transcription	Pancreas	Pancrea
13	chr9:85642400-85645400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr9:85643000-85644000	Weak transcription	Placenta	Placenta
15	chr9:85643000-85645000	Enhancers	A549	lung
16	chr9:85643200-85644200	Enhancers	Fetal Intestine Small	intestine
17	chr9:85643200-85645400	Weak transcription	Osteobl	bone
18	chr9:85643200-85645600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr9:85643200-85645600	Enhancers	Rectal Mucosa Donor 31	rectum
20	chr9:85643400-85643600	Enhancers	Colonic Mucosa	Colon
21	chr9:85643400-85644200	Enhancers	Sigmoid Colon	Sigmoid Colon
22	chr9:85643400-85644800	Enhancers	Fetal Intestine Large	intestine
23	chr9:85643400-85644800	Weak transcription	NHDF-Ad	bronchial
24	chr9:85643400-85645000	Weak transcription	Esophagus	oesophagus
25	chr9:85643400-85645600	Weak transcription	Muscle Satellite Cultured Cells	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links