Variant report
| Variant | rs73651032 |
|---|---|
| Chromosome Location | chr9:85716009-85716010 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr9:85715783..85717290-chr9:85720395..85722921,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:18)
| rs_ID | r2[population] |
|---|---|
| rs10429640 | 1.00[EUR][1000 genomes] |
| rs17085992 | 1.00[EUR][1000 genomes] |
| rs55999203 | 1.00[EUR][1000 genomes] |
| rs57254984 | 1.00[EUR][1000 genomes] |
| rs57845461 | 1.00[EUR][1000 genomes] |
| rs58019119 | 1.00[EUR][1000 genomes] |
| rs58084620 | 1.00[EUR][1000 genomes] |
| rs58273828 | 1.00[EUR][1000 genomes] |
| rs73651022 | 1.00[EUR][1000 genomes] |
| rs73651023 | 1.00[EUR][1000 genomes] |
| rs73651024 | 1.00[EUR][1000 genomes] |
| rs73651025 | 1.00[EUR][1000 genomes] |
| rs73651026 | 1.00[EUR][1000 genomes] |
| rs73651028 | 1.00[EUR][1000 genomes] |
| rs73651029 | 1.00[EUR][1000 genomes] |
| rs73651030 | 1.00[EUR][1000 genomes] |
| rs73651031 | 1.00[EUR][1000 genomes] |
| rs73651038 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv893511 | chr9:85495968-85833127 | Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 2 | nsv1043722 | chr9:85663674-85747562 | Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv831642 | chr9:85679425-85817338 | Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 4 | nsv831643 | chr9:85679431-85798990 | Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr9:85714400-85716400 | Enhancers | Foreskin Melanocyte Primary Cells skin03 | Skin |
