Variant report

Variant	rs73651026
Chromosome Location	chr9:85678993-85678994
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10429640	1.00[EUR][1000 genomes]
rs17085992	1.00[EUR][1000 genomes]
rs55999203	1.00[EUR][1000 genomes]
rs57254984	1.00[EUR][1000 genomes]
rs57845461	1.00[EUR][1000 genomes]
rs58019119	1.00[EUR][1000 genomes]
rs58084620	1.00[EUR][1000 genomes]
rs58273828	1.00[EUR][1000 genomes]
rs73651022	1.00[EUR][1000 genomes]
rs73651023	1.00[EUR][1000 genomes]
rs73651024	1.00[EUR][1000 genomes]
rs73651025	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73651028	1.00[EUR][1000 genomes]
rs73651029	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73651030	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73651031	1.00[EUR][1000 genomes]
rs73651032	1.00[EUR][1000 genomes]
rs73651038	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893511	chr9:85495968-85833127	Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1043722	chr9:85663674-85747562	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85674400-85679800	Active TSS	Rectal Mucosa Donor 29	rectum
2	chr9:85676000-85679400	Active TSS	Rectal Mucosa Donor 31	rectum
3	chr9:85676200-85679000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
4	chr9:85676200-85679000	Active TSS	Rectal Smooth Muscle	rectum
5	chr9:85676600-85679000	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
6	chr9:85676600-85679000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
7	chr9:85676800-85679000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
8	chr9:85676800-85679000	Active TSS	Fetal Intestine Small	intestine
9	chr9:85677200-85679000	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
10	chr9:85677400-85679000	Active TSS	Cortex derived primary cultured neurospheres	brain
11	chr9:85677400-85679400	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
12	chr9:85677800-85679000	Active TSS	Sigmoid Colon	Sigmoid Colon
13	chr9:85677800-85679000	Active TSS	Stomach Mucosa	stomach
14	chr9:85678400-85679000	Bivalent/Poised TSS	Fetal Stomach	stomach
15	chr9:85678400-85679000	Flanking Bivalent TSS/Enh	A549	lung
16	chr9:85678400-85679400	Active TSS	Duodenum Mucosa	Duodenum
17	chr9:85678600-85679000	Active TSS	Fetal Intestine Large	intestine
18	chr9:85678600-85679200	Active TSS	Pancreatic Islets	Pancreatic Islet
19	chr9:85678600-85679200	Bivalent Enhancer	Fetal Lung	lung
20	chr9:85678600-85679600	Weak transcription	Pancreas	Pancrea
21	chr9:85678600-85681400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr9:85678800-85679200	Enhancers	Hela-S3	cervix
23	chr9:85678800-85681600	Weak transcription	HMEC	breast

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