Variant report

Variant	rs7030604
Chromosome Location	chr9:85671274-85671275
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:85670132..85672799-chr9:85673818..85675715,2	MCF-7	breast:
2	chr9:85669834..85672672-chr9:85676087..85678737,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165105	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10117735	1.00[MEX][hapmap]
rs17085959	1.00[MEX][hapmap];0.85[YRI][hapmap]
rs17085961	1.00[MEX][hapmap];0.85[YRI][hapmap]
rs17085963	0.85[YRI][hapmap]
rs17085969	0.85[YRI][hapmap]
rs17085973	0.85[YRI][hapmap]
rs17085980	0.92[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17085982	0.85[YRI][hapmap]
rs17085986	1.00[MEX][hapmap];0.86[YRI][hapmap]
rs17085988	0.86[YRI][hapmap]
rs56732286	1.00[AMR][1000 genomes]
rs57166033	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57296213	1.00[AMR][1000 genomes]
rs58577670	1.00[AMR][1000 genomes]
rs7043044	0.85[YRI][hapmap]
rs7043189	0.85[YRI][hapmap]
rs7043478	0.84[YRI][hapmap]
rs7043943	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73467555	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73467563	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73467565	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73467574	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73467581	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73467583	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73469445	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73469470	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73469501	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471411	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471425	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471438	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471447	1.00[AMR][1000 genomes]
rs73471451	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471455	1.00[AMR][1000 genomes]
rs73471457	1.00[AMR][1000 genomes]
rs73471458	1.00[AMR][1000 genomes]
rs73471460	1.00[AMR][1000 genomes]
rs73471461	1.00[AMR][1000 genomes]
rs73471464	1.00[AMR][1000 genomes]
rs73471466	1.00[AMR][1000 genomes]
rs73471468	1.00[AMR][1000 genomes]
rs73471469	1.00[AMR][1000 genomes]
rs73471471	1.00[AMR][1000 genomes]
rs73471473	1.00[AMR][1000 genomes]
rs73471474	1.00[AMR][1000 genomes]
rs73471479	1.00[AMR][1000 genomes]
rs73471485	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471486	1.00[AMR][1000 genomes]
rs7470760	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893511	chr9:85495968-85833127	Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1043722	chr9:85663674-85747562	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85655200-85671400	Weak transcription	Fetal Intestine Small	intestine
2	chr9:85663200-85676400	Weak transcription	Gastric	stomach
3	chr9:85663600-85673400	Weak transcription	Stomach Mucosa	stomach
4	chr9:85663800-85674200	Weak transcription	Pancreas	Pancrea
5	chr9:85664400-85671400	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr9:85670600-85672600	Enhancers	Fetal Intestine Large	intestine
7	chr9:85670800-85672000	Active TSS	Rectal Mucosa Donor 29	rectum
8	chr9:85670800-85673200	Enhancers	Rectal Mucosa Donor 31	rectum
9	chr9:85671200-85672400	Enhancers	A549	lung

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