Variant report

Variant	rs73469445
Chromosome Location	chr9:85641539-85641540
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:85639962..85642383-chr9:85676276..85678231,3	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C9orf103-7	chr9:85634340-85642318	predAs_engstrom06_AI205792_1

Variant related genes	Relation type
ENSG00000165105	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs17085980	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56732286	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57166033	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57296213	1.00[AMR][1000 genomes]
rs58577670	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60115968	0.87[AFR][1000 genomes]
rs7030604	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7043943	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73467555	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73467563	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73467565	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73467574	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73467581	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73467583	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73469470	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73469501	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471411	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471425	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471438	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471447	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471451	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471455	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471457	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471458	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471460	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471461	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471464	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471466	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471468	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471469	1.00[AMR][1000 genomes]
rs73471471	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471473	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471474	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471479	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471485	1.00[AMR][1000 genomes]
rs73471486	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471487	0.84[AFR][1000 genomes]
rs7470760	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050771	chr9:85416931-85643417	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv893511	chr9:85495968-85833127	Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85603200-85643800	Weak transcription	Duodenum Mucosa	Duodenum
2	chr9:85610800-85642000	Weak transcription	Fetal Intestine Large	intestine
3	chr9:85613600-85643400	Weak transcription	Colonic Mucosa	Colon
4	chr9:85617200-85645800	Weak transcription	Stomach Mucosa	stomach
5	chr9:85621000-85645400	Weak transcription	Gastric	stomach
6	chr9:85623600-85643200	Weak transcription	Fetal Intestine Small	intestine
7	chr9:85628600-85643400	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr9:85630000-85641600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr9:85635600-85641800	Weak transcription	Esophagus	oesophagus
10	chr9:85636400-85643600	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr9:85637400-85643200	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr9:85639800-85645000	Enhancers	HMEC	breast
13	chr9:85640000-85641600	Weak transcription	Osteobl	bone
14	chr9:85640000-85641800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr9:85640000-85641800	Weak transcription	NHLF	lung
16	chr9:85640200-85642000	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr9:85640400-85642000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr9:85640400-85644400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr9:85640400-85656400	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr9:85640800-85641800	Weak transcription	Placenta	Placenta
21	chr9:85641200-85641800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr9:85641200-85641800	Enhancers	A549	lung
23	chr9:85641200-85642000	Enhancers	NH-A	brain
24	chr9:85641200-85643200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr9:85641400-85642000	Enhancers	Pancreas	Pancrea
26	chr9:85641400-85642800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr9:85641400-85643000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr9:85641400-85643400	Enhancers	Muscle Satellite Cultured Cells	--
29	chr9:85641400-85643400	Enhancers	HSMM	muscle
30	chr9:85641400-85643400	Enhancers	NHDF-Ad	bronchial
31	chr9:85641400-85644800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr9:85641400-85645000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr9:85641400-85645000	Enhancers	NHEK	skin

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