Variant report

Variant	rs73471425
Chromosome Location	chr9:85662549-85662550
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:85648451..85650186-chr9:85661316..85662880,2	MCF-7	breast:
2	chr9:85658412..85663531-chr9:85675948..85679642,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165105	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs17085980	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56732286	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57166033	1.00[AMR][1000 genomes]
rs57296213	1.00[AMR][1000 genomes]
rs58577670	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60115968	0.89[AFR][1000 genomes]
rs7030604	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7043943	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73467555	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73467563	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73467565	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73467574	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73467581	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73467583	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73469445	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73469470	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73469501	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471411	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471438	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471447	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471451	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471455	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471457	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471458	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471460	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471461	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471464	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471466	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471468	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471469	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471471	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471473	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471474	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471479	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471485	1.00[AMR][1000 genomes]
rs73471486	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471487	0.86[AFR][1000 genomes]
rs7470760	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893511	chr9:85495968-85833127	Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85644800-85670600	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr9:85645600-85662800	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr9:85655200-85671400	Weak transcription	Fetal Intestine Small	intestine
4	chr9:85656800-85662800	Weak transcription	Pancreas	Pancrea
5	chr9:85657400-85662600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr9:85660400-85664400	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr9:85660800-85663000	Weak transcription	Stomach Mucosa	stomach
8	chr9:85661400-85663800	Enhancers	A549	lung
9	chr9:85662200-85663800	Enhancers	Fetal Heart	heart
10	chr9:85662400-85662600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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