Variant report

Variant	rs73471460
Chromosome Location	chr9:85692907-85692908
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:85674686..85677678-chr9:85690780..85693708,2	MCF-7	breast:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs17085980	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56732286	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57166033	1.00[AMR][1000 genomes]
rs57296213	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58577670	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7030604	1.00[AMR][1000 genomes]
rs7043943	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73467555	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73467563	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73467565	1.00[AMR][1000 genomes]
rs73467574	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73467581	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73467583	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73469445	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73469470	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73469501	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471411	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471425	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471438	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471447	1.00[AMR][1000 genomes]
rs73471451	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471455	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471457	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471458	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471461	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471464	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471466	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471468	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471469	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471471	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471473	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471474	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471479	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471485	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471486	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471487	1.00[AFR][1000 genomes]
rs7470760	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893511	chr9:85495968-85833127	Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1043722	chr9:85663674-85747562	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv831642	chr9:85679425-85817338	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv831643	chr9:85679431-85798990	Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85682400-85706200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr9:85685000-85696600	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr9:85692000-85693200	Enhancers	Stomach Mucosa	stomach
4	chr9:85692800-85693000	Enhancers	Pancreas	Pancrea

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